Email : sumanta.ray@aliah.ac.in

Address :

Joined : 11.11.2013

Assistant Professor,

Department of Computer Science and Engineering,

New Town, Kolkata-700156

Teaching Experience

Assistant Professor in the Department of Computer Science and Engineering, Aliah University, Kolkata-700156 (Current Position)

Education

Dr. Sumanta Ray is currently serving as an Assistant professor in the Department of Computer Science and Engineering in Aliah University, Kolkata.  He did his B.Tech  from Kalyani Government Engineering College, West Bengal and M.Tech from University of Kalyani in 2009 and 2012 respectively. He obtained his Ph.D (Engg.) in Computer Science from Jadavpur University in 2017. . During his M.Tech he secured first rank in the University. He is the recipient of DST Inspire Fellowship Govt. of India. He also received Senior Research Fellowship of CSIR (Council of Scientific and Industrial Research), MHRD, Govt. of India. He previously served as a Junior Research Fellow in a Swarna Jayanti Project at Indian Statistical Institute during 2012-2013. 

Field of Specialization

1. Computational Biology and Bioinformatics
2. Data Mining
3. Soft and Evolutionary Computing
4. Graph Theory and Network Biology

Courses Taught/Teaching

1. Algorithms,
2. Soft Computing,
3. Bioinformatics,
4. Data Mining,
5. Machine Learning,
6. Theory of Computation.

Research Area

1. Bioinformatics and Computational Biology,
2. Soft and Evolutionary Computing,
3. Machine Learning, Data Mining.

Experience

Academic Experiences

1. Assistant Professor, Department of Computer Science and Engineering, Aliah University, Kolkata, India, since November 2013 and continuing.
2. Junior Research Fellow, Machine Intelligence Unit, India Statistical Institute, Kolkata, India, from September, 2012 to November 2013.
3. Worked as a visiting Scientist at Machine Intelligence Unit, Indian Statistical Institute, Kolkata, during March,2015. and in June-July, 2017.
4. Worked in the research scheme ``Mentoring of Engineering Teachers by INAE Fellows" at Indian Statistical Institute, Kolkata, from 15th May, 2106 to 15th July, 2015.

Administrative Experience:

1. Work as a Chief Coordinator of Spoken Tutorial Project Implementation in Aliah University in Collaboration with IIT-Bombay.
2. Member of Central Time-Table Committee.
3. Member of Training and Placement Cell.
4. Member of Fan Purchasing Committee.
5. Member of Doctoral Research Committee (DRC) of CSE Department.

Conference Papers Published

1. S. Ray, A. Mukhopadhyay and U. Maulik, "Predicting Annotated HIV-1 Human PPIs using a Biclustering Approach to Association Rule Mining", In Proc. EAIT-2012, pp. 28-31, Kolkata, India, November 2012.

2. S. Ray, M. De and A. Mukhopadhyay, "A Multiobjective GO based Approach to Protein Complex Detection", In Proc. 2nd International Conference on Computer, Communication, Control and Information Technology (C3IT-2012),Volume 4, pp. 555–560 (Procedia Technology, Elsevier), Hooghly, West Bengal, India, February 2012.

3. S. Ray, S. Bandyopadhyay, A. Mukhopadhyay, U. Maulik, "Incorporating Fuzzy Semantic Similarity Measure in Detecting Human Protein Complexes in PPI Network: A Multiobjective Approach", In Proc. FuzzIEEE-2013, Hyderabad, India, July 2013.

4. S. Ray, S.Biswas, A. Mukhopadhyay and S. Bandyopadhyay, "Detecting Perturbation in Co-expression Modules Associated with Different Stages of HIV-1 Progression: A Multi-objective Evolutionary Approach", In Proc. EAIT-2014, Kolkata, India, December 19 - 21, 2014.

5. S. Ray, S. Chakrabarty and A. Mukhopadhyay, "DCoSpect: a novel differentially co-expressed gene Module detection algorithm using spectral clustering", In Proc FICTA- 2015, Volume 404, pp-69-77, National Institute of Technology, Durgapur, India.

6. S. Ray, A. Hossain and U.Maulik, "Disease associated protein complex detection: a multi-objective evolutionary approach", In Proc. MICROCOM-2016, NIT Durgapur.

7. S. Ray, M. Hossain and L. Khatun, "Discovering preservation pattern from co-expression modules in progression of HIV-1 disease: An eigengene based approach", International Conference on Advances in Computing, Communications and Informatics (ICACCI-2016).

8.  S. Ray, SM. Hossain and L. Khatun Discovering preservation pattern from co-expression modules in progression of HIV-1 disease: An eigengene based approach", International Conference on Advances in Computing, Communications and Informatics (ICACCI-2016),2016.

9. SA. Khan and S.Ray Integrating multi-view data: A hypergraph based approach ", First International Conference on Computational Intelligence, Communications, and Business Analytics (CICBA-2017).

10. SM Hossain, S. Ray, TS Tannee and A. Mukhopadhyay  Analyzing Prognosis Characteristics of Hepatitis C using a Biclustering Based Approach Number", 7th International Conference on Advances in Computing and Communications (ICACC-2017) vol. 115, pp 282 - 289.

11. M. Hossain, Z. Mahboob, R. Chowdhury, A. Sohel and S. Ray, "Protein complex detection in PPI network by identifying mutually exclusive protein-protein interactions", Elsevier Procedia Computer Science, Volume - 93, pp. 1054-1060, 2016.

12. D. Bhattachariya, M. Hossain, R. Sultana and S. Ray  ``Topological Inquisition into the PPI Networks Associated with Human Diseases through Graphlet Frequency Distribution", 7th International Conference on Pattern Recognition and Machine Intelligence (PReMI 2017), Kolkata, 2017.

13. S. Biswas, S.Ray, and S. Bandyopadhyay,  ``Analysis on Preservation Characteristics of Modular Structure during HIV-1 Progression using Weighted and Normalized Graphlet Frequency Distribution",  IEEE 4th International Conference for Convergence in Technology (I2CT ),2018 (Accepted).

Journal Papers Published

1. A. Mukhopadhyay, S. Ray and M. De, "Detecting Protein Complexes in PPI Network: A Gene Ontology-based Multiobjective Evolutionary  Approach", Molecular BioSystems, Royal Society of Chemistry, Vol. 8, No. 11, pp. 3036-3048, 2012. (I. F 2.92)

2. A. Mukhopadhyay, S. Ray and U. Maulik, "Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach ", BMC Bioinformatics, Vol. 15, No. 26, 2014. (I.F 2.44)

3.  S. Bandyopadhyay, S. Ray, A. Mukhopadhyay and U. Maulik, "A Review of In Silico Approaches for Analysis and Prediction of HIV-1-Human Protein-Protein Interactions", Briefings in Bioinformatics, Vol. 16, No. 5, pp: 830-851, 2015. (I.F 5.13)

4. S. Bandyopadhyay, S. Ray, A. Mukhopadhyay and U. Maulik, "A multiobjective approach for identifying protein complexes and studying their association in multiple disorders", Algorithms for Mol Biol. 2015; 10: 24. (I. F: 1.786).

5. S. Ray and S.Bandyopadhyay, "Discovering condition specific topological pattern changes in coexpression network: an application to  HIV-1 progression", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.13, no. 06, pp. 1086-1099, 2016 (I.F 1.995).

6. S. Ray and S.Bandyopadhyay, "A NMF based approach for integrating multiple data sources to predict HIV-1-human PPIs",  BMC Bioinformatics, 17: 121, 2016. (I.F 2.44)

7. S.Ray and U.Maulik, "Discovering perturbation of modular structure in HIV progression by integrating multiple data sources through non-negative matrix factorization", IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol.15:3,pp: 869-877, 2016. (I.F-1.995).

8. S.Ray and U.Maulik, "Identifying differentially coexpressed module during HIV disease progression: A multiobjective approach"., Scientific Reports (nature publishing group), 7:86, 2017 (I.F- 4.25)

9. M. Hossain and S. Ray and A. Mukhopadhyay, "Preservation affinity in consensus modules among stages of HIV-1 Progression", BMC Bioinformatics, 18:181, 2017,  (I.F-2.44).

10. U. Maulik, S. Basu, and S. Ray  ``Identifying protein complexes in PPI network using non-cooperative sequential game", Scientific Reports (Nature Publishing group), 7: 8410, 2017.  (I.F- 4.25).

11. SM. Hossain, S. Ray and A. Mukhopadhyay  ``A Comprehensive Analysis on Preservation Patterns of Gene Co-Expression Networks during Alzheimer's Disease Progression", BMC Bioinformatics, Dec 20;18(1):579. doi: 10.1186/s12859-017-1946-8, 2017. (I.F 2.44).

12. S. Ray, A. Mukhopadhyay and U.Maulik, ``A review of Computational Approaches for analysis of Hepatities C Virua (HCV)-mediated Liver disease", Briefings in Functional Genomics, Oxford University press, 2017 Nov 29. doi: 10.1093/bfgp/elx040. (I.F 4.098)

13.  S. Ray, A. Alberuni, and U.Maulik “Computational prediction of HCVhuman protein-protein interaction via topological analysis of HCV infected PPI modules”, IEEE Transaction on Nanobioscience, Vol.17:1, pp-55-61, 2017. (I.F 2.78) .